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AT4G32530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.692
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATPase, F0/V0 complex, subunit C protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, F0/V0 complex, subunit C protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT2G25610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14674eggNOG:COG0636eggNOG:KOG0233EMBL:AK220736EMBL:AL050398EMBL:AL161581EMBL:AY042863
EMBL:AY072480EMBL:AY226998EMBL:CP002687EnsemblPlants:AT4G32530EnsemblPlants:AT4G32530.1entrez:829388ExpressionAtlas:Q9SZY7
GeneID:829388Genevisible:Q9SZY7GO:GO:0000139GO:GO:0005789GO:GO:0015078GO:GO:0015991GO:GO:0016021
GO:GO:0033179hmmpanther:PTHR10263hmmpanther:PTHR10263:SF10HOGENOM:HOG000056522IntAct:Q9SZY7InterPro:IPR000245InterPro:IPR002379
PaxDb:Q9SZY7Pfam:PF00137Pfam:Q9SZY7PhylomeDB:Q9SZY7PIR:T08586PRINTS:PR00122PRO:PR:Q9SZY7
ProteinModelPortal:Q9SZY7Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_194979.1SMR:Q9SZY7STRING:3702.AT2G25610.1
SUPFAM:0035882SUPFAM:SSF81333TAIR:AT4G32530TMHMM:TMhelixUniGene:At.3330UniProt:Q9SZY7
Coordinates (TAIR10) chr4:-:15693399..15694958
Molecular Weight (calculated) 18375.80 Da
IEP (calculated) 7.92
GRAVY (calculated) 1.11
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)