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AT4G15520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 7549 Blast hits to 7548 proteins in 2062 species: Archae - 19; Bacteria - 6000; Metazoa - 86; Fungi - 2; Plants - 92; Viruses - 0; Other Eukaryotes - 1350 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0566eggNOG:KOG0838EMBL:AK117406EMBL:BT004979EMBL:CP002687EnsemblPlants:AT4G15520EnsemblPlants:AT4G15520.1
entrez:827225Gene3D:3.40.1280.10GeneID:827225GO:GO:0003723GO:GO:0006396GO:GO:0008173Gramene:AT4G15520.1
hmmpanther:PTHR12029hmmpanther:PTHR12029:SF48InterPro:IPR001537InterPro:IPR029026InterPro:IPR029028KEGG:ath:AT4G15520OMA:HNIAKRH
Pfam:PF00588Proteomes:UP000006548RefSeq:NP_193287.1SMR:Q8GYT1STRING:3702.AT4G15520.1SUPFAM:SSF75217TAIR:AT4G15520
UniGene:At.44851UniGene:At.66627UniProt:Q8GYT1
Coordinates (TAIR10) chr4:+:8862829..8864366
Molecular Weight (calculated) 24459.50 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.26
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFESYVVV HNIAKRHNVG TLARSATAFG VTELILVGRR DFNAFGSHGS ASHIRFRHFH SLIEARNYLK EEKDCDICGV EIADGASAVN EHPFKRNTAF
101: LLGNEGSGLS AKEYEICDFF VYIPQYGCGT ASLNVTVAAS IVLHHFGVWA GFSERVRDGS KFIVADRPVR QGRRNFCAGT EESVIEERKL RKESAENGFF
201: DDNGNENGSS SSDLLDGLFL NE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)