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AT3G62090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : phytochrome interacting factor 3-like 2
Curator
Summary (TAIR10)
encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.
Computational
Description (TAIR10)
phytochrome interacting factor 3-like 2 (PIL2); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: red or far-red light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 1467 Blast hits to 1461 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1464; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWJQeggNOG:ENOG41104VAEMBL:GQ477368EnsemblPlants:AT3G62090
EnsemblPlants:AT3G62090.1entrez:825382ExpressionAtlas:D0EDQ7hmmpanther:PTHR12565
hmmpanther:PTHR12565:SF3HOGENOM:HOG000115543PaxDb:D0EDQ7Pfam:PF00010
Pfscan:PS50888STRING:3702.AT3G62090.2tair10-symbols:PIF6tair10-symbols:PIL2
UniProt:D0EDQ7
Coordinates (TAIR10) chr3:-:22989097..22990495
Molecular Weight (calculated) 38451.70 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.65
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MELVFENGQI LAKGQRSNVS LHNQRTKSIM DLYEAEYNED FMKSIIHGGG GAITNLGDTQ VVPQSHVAAA HETNMLESNK HVDDSETLKA SSSKRMMVDY
101: HNRKKIKFIP PDEQSVVADR SFKLGFDTSS VGFTEDSEGS MYLSSSLDDE SDDARPQVPA RTRKALVKRK RNAEAYNSPE RNQRNDINKK MRTLQNLLPN
201: SHKDDNESML DEAINYMTNL QLQVQMMTMG NRFVTPSMMM PLGPNYSQMG LAMGVGMQMG EQQFLPAHVL GAGLPGINDS ADMLRFLNHP GLMPMQNSAP
301: FIPTENCSPQ SVPPSCAAFP NQIPNPNSLS NLDGATLHKK SRKTNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)