AT3G57000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleolar essential protein-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21092610..21094109 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33831.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||
| Length | 298 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRPYGIKVN KRKEREERYD KEEDEVEEQP KFEQKQKARE SSKKAKKEST SRAEEDNDEE EVTVEATAAA EDIVGGIPIV LNAPNKEKSG IVFVLEKASL 101: EVAKVGKTYQ LLNSDDHANF LKKNNRNPAD YRPDITHQAL LMILDSPVNK AGRLKAVYVR TEKGVLFEVK PHVRIPRTFK RFAGIMLQLL QKLSITAVNS 201: REKLLRCVKN PIEEHHLPVN SHRIGFSHSS EKLVNMQKHL ATVCDDDRDT VFVVGAMAHG KIDCNYIDEF VSVSEYPLSA AYCISRICEA LATNWNII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)