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AT3G49720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEZPeggNOG:ENOG4111QN3EMBL:AK317656EMBL:AY087451EnsemblPlants:AT3G49720EnsemblPlants:AT3G49720.1EnsemblPlants:AT3G49720.2
entrez:824134ExpressionAtlas:B9DHV0Gene3D:3.40.50.150GeneID:824134GO:GO:0016021Gramene:AT3G49720.1Gramene:AT3G49720.2
hmmpanther:PTHR34208hmmpanther:PTHR34208:SF1InterPro:IPR029063KEGG:ath:AT3G49720OMA:MRSASWWPaxDb:B9DHV0Pfam:Q9M2Y6
PhylomeDB:B9DHV0PRIDE:B9DHV0ProteinModelPortal:B9DHV0RefSeq:NP_001078265.1RefSeq:NP_566924.1STRING:3702.AT3G49720.1SUPFAM:SSF53335
TAIR:AT3G49720TMHMM:TMhelixUniGene:At.22445UniProt:B9DHV0UniProt:Q9M2Y6
Coordinates (TAIR10) chr3:-:18440192..18441655
Molecular Weight (calculated) 28533.50 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.11
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MARRQVGSTR RVGDGGSFPF AGALHSKSRS SPLLSICLVL VGACLLIGYA YSGPGIFKSI KEVSKVTGDY SCTAEVQRAI PVLKKAYGDG MRKVLHVGPD
101: TCSVVSSLLK EEETEAWGVE PYDIEDADSH CKSFVSKGLV RVADIKFPLP YRAKSFSLVI VSDALDYLSP KYLNKTVPEL ARVASDGVVL FAGLPGQQRA
201: KVAELSKFGR PAKMRSASWW NRFFVQTNLE ENDAPSKKFE QAVSKGLYKP ACQVFHLKPL H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)