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AT3G26030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta
Curator
Summary (TAIR10)
protein phosphatase 2A regulatory subunit isoform B' delta
Computational
Description (TAIR10)
serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (ATB' DELTA); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: nucleolus, protein phosphatase type 2A complex, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2); Has 1183 Blast hits to 1155 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 568; Fungi - 166; Plants - 302; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
Protein Annotations
BioGrid:7531eggNOG:ENOG410XQJWeggNOG:KOG2085EMBL:AB023041
EMBL:AF062396EMBL:AY091037EMBL:AY117349EMBL:CP002686
EnsemblPlants:AT3G26030EnsemblPlants:AT3G26030.1entrez:822200GeneID:822200
Genevisible:Q9ZQY6GO:GO:0000159GO:GO:0005730GO:GO:0005737
GO:GO:0007165GO:GO:0008601Gramene:AT3G26030.1hmmpanther:PTHR10257
hmmpanther:PTHR10257:SF26HOGENOM:HOG000067326IntAct:Q9ZQY6InterPro:IPR002554
InterPro:IPR016024KEGG:ath:AT3G26030KO:K11584OMA:FWDNGES
PANTHER:PTHR10257PaxDb:Q9ZQY6Pfam:PF01603Pfam:Q9ZQY6
PhylomeDB:Q9ZQY6PIRSF:PIRSF028043PRIDE:Q9ZQY6PRO:PR:Q9ZQY6
ProteinModelPortal:Q9ZQY6Proteomes:UP000006548Reactome:R-ATH-198753Reactome:R-ATH-202670
RefSeq:NP_189232.1SMR:Q9ZQY6STRING:3702.AT3G26030.1SUPFAM:SSF48371
TAIR:AT3G26030tair10-symbols:ATB' DELTAUniGene:At.6325UniGene:At.73140
UniProt:Q9ZQY6
Coordinates (TAIR10) chr3:+:9517741..9519260
Molecular Weight (calculated) 55243.40 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.39
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKQILGKLP KKTSAKFWDN GESQTLDNNN NQGGGDEVLS QRTSSNGDTS LDCVSSFDVL PRLRDVSISE KQELFLKKLR LCCLVFDFVA EPQQNFKEKE
101: IKRQTLLEVV DYVISSGNGK FPESVIQEAT KMISANLFSN PHRQWKNKTP EALDLEEEEG SLNPSWPHLQ IVYEFLLRIV ASPNTDPKIS KKYIDHTFVL
201: KLLDLFDSED PREREYLKTI LHRIYGRFMV HRPFIRKTMN NILYDFIFET GKHSGIAEFL EVLGSIINGF ALPLKEEHKL FLTRVLIPLH KLKCLPNYHQ
301: QLSYCVIQFV EKDCKLADTV IRGMLKYWPV TNSAKEIMFL NELEEILEAT QLTEFERCMV PLSRQIAQCL SSSHFQVAER ALYLWNNDHV TNLVRQNSRI
401: ILPIVFPALE KNGSSHWNQA VKNLTENVLK VLSDTNPDLF EECLHKFQED QQKAEDTKKK NGETWRQLEE IVASMAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)