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AT3G24160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : putative type 1 membrane protein
Curator
Summary (TAIR10)
Encodes a putative Type 1 membrane protein (PMP).
Computational
Description (TAIR10)
putative type 1 membrane protein (PMP); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IT30eggNOG:ENOG4111ZQIEMBL:AB028621EMBL:AF104329EMBL:AY053413EMBL:AY085022EMBL:AY133587
EMBL:CP002686EnsemblPlants:AT3G24160EnsemblPlants:AT3G24160.1entrez:822002GeneID:822002GO:GO:0005774GO:GO:0005783
GO:GO:0005794GO:GO:0016020GO:GO:0016021Gramene:AT3G24160.1hmmpanther:PTHR37735HOGENOM:HOG000029185KEGG:ath:AT3G24160
OMA:ANWLEGSPhylomeDB:Q9ZSJ7PIR:T52336Proteomes:UP000006548RefSeq:NP_189058.1STRING:3702.AT3G24160.1TAIR:AT3G24160
tair10-symbols:PMPTMHMM:TMhelixUniGene:At.20418UniProt:Q9ZSJ7
Coordinates (TAIR10) chr3:+:8726241..8729023
Molecular Weight (calculated) 39135.90 Da
IEP (calculated) 4.47
GRAVY (calculated) 0.17
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAFYVFVVA LLLTLNYRGE ASGSVFFIDG SNNQYLRPRS SSEALPMSPV EISAAVSALL GFAPSATLTA DGSSKLNKIL KPNPFERPRA AFVLEIAGAD
101: DMLLETSPSH SFLGNAIRSS IKSDSYKADT ELPDNEVVVV SVNEPSSDVT DKDINDFASW LGGSYVAGAE PSSGLLSIPL AGGANVEFNL EKEAERKFAL
201: NLLGLYQNIR QAVSVYDDLS HGIDRTAELT VGRFGGIDAL AQEYGQGMAK QGMDVLLSTL SKLFNLLETS HKGQIVGVIV LDERVNQESE NLLNFGSSRS
301: SARSMVEVEG IPSAAIIAEV ILVRLTLAWL TGIILLIATI LGVYFLMNMP LTKDTLLYSN VKLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)