suba logo
AT3G09030.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.719
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain with WD40/YVTN repeat-like protein (TAIR:AT5G41330.1); Has 1593 Blast hits to 1581 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 1335; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSWIeggNOG:KOG2714EMBL:AC009326EMBL:AC010871EMBL:AK117411EMBL:BT026142EMBL:CP002686
EnsemblPlants:AT3G09030EnsemblPlants:AT3G09030.1entrez:820055GeneID:820055Genevisible:Q9S7R7GO:GO:0016567GO:GO:0051260
Gramene:AT3G09030.1hmmpanther:PTHR11145HOGENOM:HOG000239940InParanoid:Q9S7R7InterPro:IPR000210InterPro:IPR003131InterPro:IPR011044
InterPro:IPR011333iPTMnet:Q9S7R7KEGG:ath:AT3G09030OMA:RRNFVDKPaxDb:Q9S7R7Pfam:PF02214Pfam:Q9S7R7
PhylomeDB:Q9S7R7PRIDE:Q9S7R7PRO:PR:Q9S7R7ProteinModelPortal:Q9S7R7Proteomes:UP000006548RefSeq:NP_187515.1SMART:SM00225
SMR:Q9S7R7STRING:3702.AT3G09030.1SUPFAM:SSF50969SUPFAM:SSF54695TAIR:AT3G09030UniGene:At.40182UniGene:At.74993
UniPathway:UPA00143UniProt:Q9S7R7
Coordinates (TAIR10) chr3:+:2754841..2756223
Molecular Weight (calculated) 49281.10 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.13
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVSDGGKRV KLNVGGEIFE TNASTIQSSC PDSLLAALST STSHGSNPVF IDRDPEIFAV ILNLLRTGRL PANSSGVFSK QELLDEAMYY GVESLLRLAM
101: LPPPLLGFDA SLVSTIVPAA DGVPSALTAT AGDASLWIAH GGQISVYDWS LSHAGTVRTH LNDITSICRV WGEAAAIGSG SASGLHFYDL SGGRYIGSTH
201: WTDPEDPRIH KARVAAVADS EGGVFASFDC LHRENSVLQI DKSTLQVAAV IGQQSGNSAK TTVPEKLRWL PAKGLLVGSA VQRGVFGCSG YIRIWDPRSR
301: NIVWETNEPG SGRSTRFGDA LADMDVDVED SILFKVCSKS GDLGMADIRK LGEDPWVYMS DENPGAWKAG DGGGYSVVHC YRKQVLAARG GALEVWSSVK
401: EKTSGDPIRR RNFVDKEDDS KRGMISKIEA GGDRLFVSRE CMEGVEVWET SSFSGVVSVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)