AT3G09030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.646 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BTB/POZ domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BTB/POZ domain-containing protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain with WD40/YVTN repeat-like protein (TAIR:AT5G41330.1); Has 1593 Blast hits to 1581 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 1335; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2754841..2756223 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49281.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVSDGGKRV KLNVGGEIFE TNASTIQSSC PDSLLAALST STSHGSNPVF IDRDPEIFAV ILNLLRTGRL PANSSGVFSK QELLDEAMYY GVESLLRLAM 101: LPPPLLGFDA SLVSTIVPAA DGVPSALTAT AGDASLWIAH GGQISVYDWS LSHAGTVRTH LNDITSICRV WGEAAAIGSG SASGLHFYDL SGGRYIGSTH 201: WTDPEDPRIH KARVAAVADS EGGVFASFDC LHRENSVLQI DKSTLQVAAV IGQQSGNSAK TTVPEKLRWL PAKGLLVGSA VQRGVFGCSG YIRIWDPRSR 301: NIVWETNEPG SGRSTRFGDA LADMDVDVED SILFKVCSKS GDLGMADIRK LGEDPWVYMS DENPGAWKAG DGGGYSVVHC YRKQVLAARG GALEVWSSVK 401: EKTSGDPIRR RNFVDKEDDS KRGMISKIEA GGDRLFVSRE CMEGVEVWET SSFSGVVSVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)