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AT2G44730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MADF domain (InterPro:IPR006578), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G24860.1); Has 587 Blast hits to 557 proteins in 72 species: Archae - 0; Bacteria - 33; Metazoa - 106; Fungi - 10; Plants - 386; Viruses - 8; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AC003672EMBL:CP002685EnsemblPlants:AT2G44730EnsemblPlants:AT2G44730.1entrez:819080
GeneID:819080GO:GO:0003700GO:GO:0006355GO:GO:0044212Gramene:AT2G44730.1hmmpanther:PTHR31307hmmpanther:PTHR31307:SF3
HOGENOM:HOG000092988InterPro:IPR006578InterPro:IPR017877KEGG:ath:AT2G44730ncoils:CoilOMA:KMEKMKMPfam:PF13837
Pfscan:PS50090PhylomeDB:O80512PIR:T01600PROSITE:PS50090Proteomes:UP000006548RefSeq:NP_182001.1SMART:SM00595
TAIR:AT2G44730UniGene:At.36721UniProt:O80512
Coordinates (TAIR10) chr2:-:18437447..18438565
Molecular Weight (calculated) 40784.00 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.83
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)