AT1G79830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : golgin candidate 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 167116 Blast hits to 92088 proteins in 3687 species: Archae - 2004; Bacteria - 38214; Metazoa - 68462; Fungi - 14168; Plants - 9575; Viruses - 617; Other Eukaryotes - 34076 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30028110..30033508 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108360.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.49 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 956 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAWFSGKVSL GGFPDLTGAV NKFQESVKNI EKNFDNALGF DDKSDSAAED AASSMWPPAV DTKSLFDPVM SFMGNTSDEK PDTLEDSVRT ENPSQIEQKE 101: EEAGSVKLAT EQAVSVEANK ETNVRREADQ ADNPEVTETV VLDPKDDEPQ SQILLEESSE YSLQTPESSG YKTSLQPNEK LEMTASQDSQ PEQPKSEAEE 201: SQPEDSEAKE VTVENKDTVH SPVLDGQHKI TYMDETTNEQ EILGENLEGR TSSKNFEVSP DINHVNRIES PVAHPSLIFE SDGSPYESSI PKRSSSDEIS 301: ERIVDFVSRE IDSRLDTSEL NESQRSSSAT NVSDSADVIL ELEKTKKEIK MLENALQGAA RQAQAKADEI AKLMHENEQL KSVTEDLKRK SNEAEVESLR 401: EEYHQRVATL ERKVYALTKE RDTLRREQNK KSDAAALLKE KDEIINQVMA EGEELSKKQA AQEAQIRKLR AQIREAEEEK KGLITKLQSE ENKVESIKRD 501: KTATEKLLQE TIEKHQAELT SQKDYYSNAL AAAKEAQALA EERTNNEARS ELENRLKEAG ERESMLVQAL EELRQTLSKK EQQAVYREDM FRGEIEDLQR 601: RYQASERRCE ELITQVPEST RPLLRQIEAM QETSYRTAEA WAAVERTLNS RLQEAESKAA TAEERERSVN ERLSQTLSRI NVLEAQLSCL RAEQGQLSKS 701: LEKERQRAAE NRQEYLAAKE EADTLEGRAN QLEVEIRELR RKHKQELQEV LLHNELIQKD LEREKASRLD LERTARINSS AVSEQLPIAR QNSAFENGSL 801: PRKLSSASSL GSMEESYFLQ ASLDSSDKFS EKRSMPEATM SPYYMKSITP SAYEATLRQK EGELASYMTR LASMESIRDS LAEELVKMTA ECEKLRGEAD 901: RVPGIKAELE ALRQRHAAAL ELMGERDEEL EELRADIVDL KEMYREQVNM LVNKIQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)