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AT1G78790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.966
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0RJeggNOG:ENOG410XYKNEMBL:AY128353EMBL:BT001158
EMBL:CP002684EnsemblPlants:AT1G78790EnsemblPlants:AT1G78790.1entrez:844215
ExpressionAtlas:Q8L7N3GeneID:844215GO:GO:0006281GO:GO:0007129
GO:GO:0051382Gramene:AT1G78790.1hmmpanther:PTHR28680HOGENOM:HOG000231242
InterPro:IPR018552OMA:IHAIFKHPfam:PF09415PhylomeDB:Q8L7N3
Proteomes:UP000006548RefSeq:NP_178000.2SMR:Q8L7N3TAIR:AT1G78790
UniGene:At.45805UniProt:Q8L7N3
Coordinates (TAIR10) chr1:-:29623930..29624785
Molecular Weight (calculated) 11682.00 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.19
Length 104 amino acids
Sequence (TAIR10)
(BLAST)
001: MDANNTFDSD LIHAIFKHIW ARRFRERERS DAIDATEAEV ALGTTKKNRL ASANANALKL SCELLKSFVS EAVQRAAIIA EAEGMEKIEA THLERILPQL
101: LLDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)