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AT1G53210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 14760709
AmiGO : vacuole 15539469
AmiGO : vacuole 16618929
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
TAIR : vacuole 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26296956 (2016): plant-type vacuole plant-type vacuole membrane
  • PMID:26091700 (2015): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sodium/calcium exchanger family protein / calcium-binding EF hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sodium/calcium exchanger family protein / calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: transmembrane transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Sodium/calcium exchanger membrane region (InterPro:IPR004837), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G29020.1); Has 622 Blast hits to 603 proteins in 166 species: Archae - 12; Bacteria - 69; Metazoa - 8; Fungi - 194; Plants - 285; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG0GeggNOG:ENOG410ZVKWEMBL:AY099550EMBL:CP002684EnsemblPlants:AT1G53210EnsemblPlants:AT1G53210.1entrez:841755
Gene3D:1.10.238.10GeneID:841755GO:GO:0000325GO:GO:0005432GO:GO:0005509GO:GO:0005773GO:GO:0005774
GO:GO:0009506GO:GO:0016020GO:GO:0016021GO:GO:0035725GO:GO:0055074GO:GO:0071472Gramene:AT1G53210.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF386HOGENOM:HOG000242381InterPro:IPR002048InterPro:IPR004837InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G53210OMA:IVQLPQMPfam:PF01699Pfscan:PS50222PhylomeDB:Q8L636PROSITE:PS00018PROSITE:PS50222
Proteomes:UP000006548RefSeq:NP_564623.2scanprosite:PS00018SMART:SM00054SMR:Q8L636STRING:3702.AT1G53210.1SUPFAM:SSF47473
TAIR:AT1G53210TMHMM:TMhelixUniGene:At.23754UniProt:Q8L636
Coordinates (TAIR10) chr1:+:19844790..19847533
Molecular Weight (calculated) 63420.40 Da
IEP (calculated) 4.97
GRAVY (calculated) 0.47
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFRSLISLL FLLFFTSSAY ARFVSLNPSS TSLISDGIDG GSNLAGSGSV IKSVVSAPAE EKEEACEQTY GFMPCTKTAL GNVFLILVYG FLMFTAATYL
101: SAGSELLLEI LGPGIVGGLF LPMLGALPDA MLIMVSGLSG DAATAQSQVS VGMGLLAGST VMLLTVIWGT CTVVGKCDLR DSIAVNNQDT KGFHLKDSGV
201: TVDIWTSYAA RIMAISVIPF VIVQLPQMLG STSGRQLSVL IALILSVLML ISYCVYQVFQ PWIQRRRLAF AKHKHVISGI LRHLKQHALG RLLDDEGQPD
301: EHVIRKLFLT IDANNDGHLS AAELKALIIG ISFEDIDFDK DDAVGKVLQD FDKTLDEQVD QEEFVRGIKQ WLIQAMGGAP SGPEAGPRTM KFLDNFHVQT
401: KREHALLGDN ENGENDEEGG EVADPKWITI KAALLLLLGA AIAAAFADPL VDTVNNFSAA TGIPSFFISF IALPLATNSS EAVSAIIFAS RKKIRTASLT
501: FSELCGGVTM NNILCLSVFL AIVYVRGLTW NFSSEVLVIL IVCLVMGGFA SFRTTYPLWT CFIAYLLYPF SLGLVYILDY WFGWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)