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AT5G58360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ovate family protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovate family protein 3 (OFP3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 4 (TAIR:AT1G06920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21192eggNOG:ENOG410IZRQeggNOG:ENOG410YV5MEMBL:AB019228
EMBL:CP002688EMBL:DQ056725EnsemblPlants:AT5G58360EnsemblPlants:AT5G58360.1
entrez:835948GeneID:835948Genevisible:Q9LVL4GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0045892Gramene:AT5G58360.1
hmmpanther:PTHR33057hmmpanther:PTHR33057:SF11HOGENOM:HOG000238410InParanoid:Q9LVL4
IntAct:Q9LVL4InterPro:IPR006458InterPro:IPR025830KEGG:ath:AT5G58360
OMA:KMGTHKFPaxDb:Q9LVL4Pfam:PF04844Pfam:PF13724
Pfam:Q9LVL4Pfscan:PS51754PRIDE:Q9LVL4PRO:PR:Q9LVL4
PROSITE:PS51754ProteinModelPortal:Q9LVL4Proteomes:UP000006548RefSeq:NP_200644.1
STRING:3702.AT5G58360.1TAIR:AT5G58360tair10-symbols:ATOFP3tair10-symbols:OFP3
TIGRfam:TIGR01568TIGRFAMs:TIGR01568UniGene:At.62442UniProt:Q9LVL4
Coordinates (TAIR10) chr5:-:23590079..23590969
Molecular Weight (calculated) 33442.10 Da
IEP (calculated) 10.71
GRAVY (calculated) -0.81
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)