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AT5G55560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 3 (TAIR:AT3G48260.1); Has 100897 Blast hits to 100061 proteins in 3189 species: Archae - 71; Bacteria - 9572; Metazoa - 37309; Fungi - 9559; Plants - 27616; Viruses - 356; Other Eukaryotes - 16414 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G55560-MONOMERBioGrid:20894EC:2.7.11.1eggNOG:ENOG410XQWZ
eggNOG:KOG0584EMBL:AB023043EMBL:BT014907EMBL:BT015030
EMBL:CP002688EnsemblPlants:AT5G55560EnsemblPlants:AT5G55560.1entrez:835650
GeneID:835650Genevisible:Q6ICW6GO:GO:0004674GO:GO:0005524
Gramene:AT5G55560.1hmmpanther:PTHR13902hmmpanther:PTHR13902:SF44HOGENOM:HOG000239343
InParanoid:Q6ICW6InterPro:IPR000719InterPro:IPR011009KEGG:ath:AT5G55560
KO:K08867OMA:HTHEPCVPaxDb:Q6ICW6Pfam:PF00069
Pfam:Q6ICW6Pfscan:PS50011PhylomeDB:Q6ICW6PRIDE:Q6ICW6
PRO:PR:Q6ICW6PROSITE:PS50011ProteinModelPortal:Q6ICW6Proteomes:UP000006548
RefSeq:NP_200367.2SMR:Q6ICW6STRING:3702.AT5G55560.1SUPFAM:SSF56112
TAIR:AT5G55560UniGene:At.27991UniProt:Q6ICW6
Coordinates (TAIR10) chr5:-:22506477..22507757
Molecular Weight (calculated) 35533.10 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.48
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTCASSDDN ESEKDKDSES FVEVDPTGRY GRYGELLGSG AVKKVYRAFD QEEGIEVAWN QVKLRCFSDD PAMTERLYSE VRLLKNLKNS NIITLYKVWR
101: DERNNTLNFI TEICTSGNLR EYRKKHRHVS MRALKKWSKQ ILKGLDYLHT HDPCIIHRDL NCSNIFVNGN IGQVKIGDLG LAAIVGKNHL AHSILGTPEF
201: MAPELYEENY TEMVDIYSYG MCVLELVSLE IPYSECDSVA KIYKRVSKGL KPEALNKVND PEAKAFIEKC IAQPRARPSA AELLCDPFFD GILDDDDEDG
301: ENNDNNGAGR IVVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)