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AT5G45250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.705
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.
Computational
Description (TAIR10)
RESISTANT TO P. SYRINGAE 4 (RPS4); CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45060.1); Has 21522 Blast hits to 16345 proteins in 586 species: Archae - 12; Bacteria - 1045; Metazoa - 1640; Fungi - 92; Plants - 18158; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).
Protein Annotations
BioGrid:19810DIP:DIP-61677NeggNOG:COG4886eggNOG:ENOG410JS6A
EMBL:AB020744EMBL:AJ243468EMBL:CP002688EnsemblPlants:AT5G45250
EnsemblPlants:AT5G45250.1entrez:834561Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:834561Genevisible:Q9XGM3GO:GO:0004872
GO:GO:0005634GO:GO:0005737GO:GO:0009626GO:GO:0009870
GO:GO:0012505GO:GO:0016020GO:GO:0042742GO:GO:0043531
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF157InParanoid:Q9XGM3InterPro:IPR000157
InterPro:IPR002182InterPro:IPR011713InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT5G45250KO:K16226OMA:HYHAFIDPaxDb:Q9XGM3
PDB:4C6RPDB:4C6TPDBsum:4C6RPDBsum:4C6T
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfam:Q9XGM3
Pfscan:PS50104PhylomeDB:Q9XGM3PIR:T51140PRIDE:Q9XGM3
PRO:PR:Q9XGM3PROSITE:PS50104ProteinModelPortal:Q9XGM3Proteomes:UP000006548
RefSeq:NP_199338.1SMART:SM00255SMR:Q9XGM3STRING:3702.AT5G45250.1
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G45250
tair10-symbols:RPS4UniGene:At.55387UniProt:Q9XGM3
Coordinates (TAIR10) chr5:-:18321914..18326022
Molecular Weight (calculated) 137733.00 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.41
Length 1217 amino acids
Sequence (TAIR10)
(BLAST)
0001: METSSISTVE DKPPQHQVFI NFRGADLRRR FVSHLVTALK LNNINVFIDD YEDRGQPLDV LLKRIEESKI VLAIFSGNYT ESVWCVRELE KIKDCTDEGT
0101: LVAIPIFYKL EPSTVRDLKG KFGDRFRSMA KGDERKKKWK EAFNLIPNIM GIIIDKKSVE SEKVNEIVKA VKTALTGIPP EGSHNAVVGA LGNSNAGTSS
0201: GDKKHETFGN EQRLKDLEEK LDRDKYKGTR IIGVVGMPGI GKTTLLKELY KTWQGKFSRH ALIDQIRVKS KHLELDRLPQ MLLGELSKLN HPHVDNLKDP
0301: YSQLHERKVL VVLDDVSKRE QIDALREILD WIKEGKEGSR VVIATSDMSL TNGLVDDTYM VQNLNHRDSL QLFHYHAFID DQANPQKKDF MKLSEGFVHY
0401: ARGHPLALKV LGGELNKKSM DHWNSKMKKL AQSPSPNIVS VFQVSYDELT TAQKDAFLDI ACFRSQDKDY VESLLASSDL GSAEAMSAVK SLTDKFLINT
0501: CDGRVEMHDL LYKFSREVDL KASNQDGSRQ RRLWLHQHII KGGIINVLQN KMKAANVRGI FLDLSEVEDE TSLDRDHFIN MGNLRYLKFY NSHCPQECKT
0601: NNKINIPDKL KLPLKEVRCL HWLKFPLETL PNDFNPINLV DLKLPYSEME QLWEGDKDTP CLRWVDLNHS SKLCSLSGLS KAEKLQRLNL EGCTTLKAFP
0701: HDMKKMKMLA FLNLKGCTSL ESLPEMNLIS LKTLTLSGCS TFKEFPLISD NIETLYLDGT AISQLPMNME KLQRLVVLNM KDCKMLEEIP GRVGELKALQ
0801: ELILSDCLNL KIFPEIDISF LNILLLDGTA IEVMPQLPSV QYLCLSRNAK ISCLPVGISQ LSQLKWLDLK YCTSLTSVPE FPPNLQCLDA HGCSSLKTVS
0901: KPLARIMPTE QNHSTFIFTN CENLEQAAKE EITSYAQRKC QLLSYARKRY NGGLVSESLF STCFPGCEVP SWFCHETVGS ELEVKLLPHW HDKKLAGIAL
1001: CAVVSCLDPQ DQVSRLSVTC TFKVKDEDKS WVAYTCPVGS WTRHGGGKDK IELDHVFIGY TSCPHTIKCH EEGNSDECNP TEASLKFTVT GGTSENGKYK
1101: VLKCGLSLVY AKDKDKNSAL ETKYDMLIGK SFQETSEGVD GRVKKTKGKY VMPVEKNFQE TTEGVDGRVN KKKKTRMDNG RPKKKQRSGR DDNQTRMQVE
1201: LQEGNINSVI MHTVKNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)