AT5G43210.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.556 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Excinuclease ABC, C subunit, N-terminal | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Excinuclease ABC, C subunit, N-terminal; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); BEST Arabidopsis thaliana protein match is: Excinuclease ABC, C subunit, N-terminal (TAIR:AT2G30350.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:17347567..17348379 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19354.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.60 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 170 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW 101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)