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AT5G23140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At5g23140-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (mitochondrial marker)

At5g23140-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At5g23140-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear-encoded CLP protease P7
Curator
Summary (TAIR10)
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G23140-MONOMEREC:3.4.21.92eggNOG:COG0740eggNOG:KOG0840
EMBL:AB006708EMBL:AK118523EMBL:BT005261EMBL:CP002688
EnsemblPlants:AT5G23140EnsemblPlants:AT5G23140.1entrez:832378Gene3D:3.90.226.10
GeneID:832378Genevisible:Q9FN42GO:GO:0004252GO:GO:0005739
GO:GO:0008270GO:GO:0009532GO:GO:0009535GO:GO:0009840
GO:GO:0050897Gramene:AT5G23140.1HAMAP:MF_00444hmmpanther:PTHR10381
hmmpanther:PTHR10381:SF11HOGENOM:HOG000285833InParanoid:Q9FN42InterPro:IPR001907
InterPro:IPR018215InterPro:IPR023562InterPro:IPR029045InterPro:IPR033135
KEGG:ath:AT5G23140KO:K01358MEROPS:S14.A02OMA:TICYGIA
PANTHER:PTHR10381PaxDb:Q9FN42PDB:1R8VPDBsum:1R8V
Pfam:PF00574Pfam:Q9FN42PhylomeDB:Q9FN42PRIDE:Q9FN42
PRINTS:PR00127PRO:PR:Q9FN42PROSITE:PS00381PROSITE:PS00382
ProteinModelPortal:Q9FN42Proteomes:UP000006548RefSeq:NP_568427.1scanprosite:PS00381
scanprosite:PS00382SMR:Q9FN42STRING:3702.AT5G23140.1SUPFAM:SSF52096
TAIR:AT5G23140tair10-symbols:CLPP2tair10-symbols:NCLPP7UniGene:At.31024
UniProt:Q9FN42
Coordinates (TAIR10) chr5:+:7783811..7784826
Molecular Weight (calculated) 26284.70 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.17
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)