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AT5G22070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.872
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G52060.2); Has 580 Blast hits to 577 proteins in 24 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE81eggNOG:ENOG410YDIXEMBL:AK118508EMBL:AK228075
EMBL:AL589883EMBL:AY136375EMBL:BT000170EMBL:CP002688
EMBL:KJ138674EnsemblPlants:AT5G22070EnsemblPlants:AT5G22070.1entrez:832268
GeneID:832268GO:GO:0008375GO:GO:0016020GO:GO:0016757
Gramene:AT5G22070.1hmmpanther:PTHR31042hmmpanther:PTHR31042:SF4HOGENOM:HOG000237469
InterPro:IPR003406KEGG:ath:AT5G22070OMA:VMTRRHAPfam:PF02485
PhylomeDB:Q9C581Proteomes:UP000006548RefSeq:NP_680193.2TAIR:AT5G22070
TMHMM:TMhelixUniGene:At.44745UniGene:At.45852UniProt:Q9C581
Coordinates (TAIR10) chr5:+:7308255..7309343
Molecular Weight (calculated) 41638.00 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.14
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSNQFVLFF SLLLCLPFVF FFVAPHVFPS PPGESLIPIS DEIDDRSLFI AAAGSTSLSH LSSGNPNPKL KIAFLFLTNS DLHFAPIWDR FFSGHSKSLY
101: NVYVHADPFV NVTRPGNGSV FENAFIANAK RTARASPTLI SATRRLLATA FLDDPANTYF AVLSQYCIPL HSFNYVYSSL FESSIFDKSD PDPNPNPRGI
201: RILYRSFMEL ISDEPRLWKR YTARGRYAMM PEVPFEKFRV GSQFFVMTRR HALLTIKDRI LWRKFKLPCY RSDECYPEEH YFPTLLNMKD PDGCTGYTLT
301: RVNWTGTVKG HPYTYKPKEV VPELIQRLRR SNHSSSYFFA RKFTPDCLKP LLAIADSVIF RD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)