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AT5G15950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenosylmethionine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G15950-MONOMERBioCyc:ARA:GQT-1263-MONOMEREC:4.1.1.50eggNOG:ENOG410XRN0
eggNOG:KOG0788EMBL:AF436825EMBL:AJ251915EMBL:AJ252212
EMBL:AL391145EMBL:AY066030EMBL:CP002688EnsemblPlants:AT5G15950
EnsemblPlants:AT5G15950.1EnsemblPlants:AT5G15950.2entrez:831452Gene3D:3.60.90.10
GeneID:831452Genevisible:Q9S7T9GO:GO:0004014GO:GO:0006557
GO:GO:0006597GO:GO:0008295Gramene:AT5G15950.1Gramene:AT5G15950.2
gramene_pathway:4.1.1.50gramene_pathway:ARGSPECAT-PWYgramene_pathway:BSUBPOLYAMSYN-PWYgramene_plant_reactome:1119317
gramene_plant_reactome:1119446gramene_plant_reactome:6874834gramene_plant_reactome:6876857hmmpanther:PTHR11570
hmmpanther:PTHR11570:SF4HOGENOM:HOG000159915InParanoid:Q9S7T9InterPro:IPR001985
InterPro:IPR016067InterPro:IPR018166InterPro:IPR018167KEGG:00270+4.1.1.50
KEGG:00330+4.1.1.50KEGG:ath:AT5G15950KO:K01611OMA:MLTCGTT
PANTHER:PTHR11570PaxDb:Q9S7T9Pfam:PF01536Pfam:Q9S7T9
PhylomeDB:Q9S7T9PIR:T51378PIRSF:PIRSF001355PRIDE:Q9S7T9
PRO:PR:Q9S7T9PROSITE:PS01336ProteinModelPortal:Q9S7T9Proteomes:UP000006548
Reactome:R-ATH-351202RefSeq:NP_001031888.1RefSeq:NP_197099.1scanprosite:PS01336
SMR:Q9S7T9STRING:3702.AT5G15950.1SUPFAM:SSF56276TAIR:AT5G15950
TIGRfam:TIGR00535TIGRFAMs:TIGR00535UniGene:At.27461UniPathway:UPA00331
UniProt:Q9S7T9
Coordinates (TAIR10) chr5:+:5206706..5207794
Molecular Weight (calculated) 40012.10 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.28
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSAIGFEG YEKRLEVTFF EPGLFLDTQG KGLRALAKSQ IDEILQPAEC TIVSSLSNDQ LDSYVLSESS LFIFPYKIVI KTCGTTKLLL SIEPLLRLAG
101: ELSLDVKAVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGHF AKLGLSSVAY LMGNDDETKK WHVYSASSAN SNNKNNVYTL EMCMTGLDKD KASVFYKNES
201: SSAGSMTDNS GIRKILPQSQ ICDFEFEPCG YSMNSIEGDA ISTIHVTPED GFSYASFEAV GYDFTTMDLS HLVSKVLTCF KPKQFSVAVH STVAQKSYDS
301: GLSVDLDDYG CKESTMESLG EERGTVMYQR FEKLGRYCGS PRSTLKCEWS SNSSCNSEDE KE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)