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AT5G13370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive GH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13360.3); Has 1602 Blast hits to 1450 proteins in 238 species: Archae - 0; Bacteria - 565; Metazoa - 54; Fungi - 2; Plants - 675; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1752-MONOMEReggNOG:ENOG410IHE6eggNOG:ENOG410XQH0EMBL:AK117242
EMBL:BT005922EMBL:CP002688EnsemblPlants:AT5G13370EnsemblPlants:AT5G13370.1
entrez:831178GeneID:831178GO:GO:0005829Gramene:AT5G13370.1
hmmpanther:PTHR31901HOGENOM:HOG000238302InterPro:IPR004993KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G13370KO:K14487
OMA:WERIQISPANTHER:PTHR31901Pfam:PF03321PhylomeDB:Q8GZ29
Proteomes:UP000006548RefSeq:NP_196841.2SMR:Q8GZ29STRING:3702.AT5G13370.1
TAIR:AT5G13370UniGene:At.43976UniProt:Q8GZ29
Coordinates (TAIR10) chr5:+:4286996..4289424
Molecular Weight (calculated) 66982.30 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.17
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPKFDPTNQ KACLSLLEDL TTNVKQIQDS VLEAILSRNA QTEYLRGFLN GQVDKQNFKK NVPVVTYEDI RSYIDRIANG EPSDLICDRP ISVLLTSSGT
101: SGGVPKLIPL TTEDLEQRIS FSSLYAPLLY KHIDGLSEGK SLIFYFVTRE SKTANGLMVR TMVTSFLKSI KQTNSFLWDS LQVSPHAITT CADTTQSMYC
201: QLLCGLLERD NVARLGAPFA SSFLKVIKFL EDHWPELCSN IRTGRLSDWI TDATCTSGIG KFLTAPNPEL ASLIEQECSK TSWEAILKRL WPKAKCIESI
301: ITGTMAQYIP LLEFYSGGLP LTSSFYGSSE CFMGVNFNPL CKPSDVSYTI IPCMGYFEFL EVEKDHQEAG HDPTEKPVVV DLVDVKIGHD YEPVVTTFSG
401: LYRYRVGDVL RATGFYNNAP HFCFVGRQKV VLSIDMDKTY EDDLLKAVTN AKLLLEPHDL MLMDFTSRVD SSSFPGHYVI YWELGSKVKD AKFEPNRDVM
501: EECCFTVEES LDAVYRKGRK NDKNIGPLEI KVVKPGAFDE LMNFFLSRGS SVSQYKTPRS VTNEEALKIL EANVISEFLS RKIPSWELHE LHSGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)