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AT5G10570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: beta HLH protein 93 (TAIR:AT5G65640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16200eggNOG:ENOG410IPM8eggNOG:ENOG410YB4FEMBL:AF488594
EMBL:AL353995EMBL:CP002688EnsemblPlants:AT5G10570EnsemblPlants:AT5G10570.1
entrez:830922Gene3D:4.10.280.10GeneID:830922GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT5G10570.1hmmpanther:PTHR31945hmmpanther:PTHR31945:SF6HOGENOM:HOG000029066
InParanoid:Q9LXA9InterPro:IPR011598iPTMnet:Q9LXA9KEGG:ath:AT5G10570
ncoils:CoilOMA:THIDICCPaxDb:Q9LXA9Pfam:PF00010
Pfam:Q9LXA9Pfscan:PS50888PhylomeDB:Q9LXA9PIR:T49982
PRIDE:Q9LXA9PRO:PR:Q9LXA9PROSITE:PS50888ProteinModelPortal:Q9LXA9
Proteomes:UP000006548RefSeq:NP_196619.1SMART:SM00353SMR:Q9LXA9
SUPFAM:SSF47459TAIR:AT5G10570UniGene:At.32362UniProt:Q9LXA9
Coordinates (TAIR10) chr5:+:3341357..3342877
Molecular Weight (calculated) 35556.20 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.51
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: METELTQLRK QESNNLNGVN GGFMAIDQFV PNDWNFDYLC FNNLLQEDDN IDHPSSSSLM NLISQPPPLL HQPPQPSSPL YDSPPLSSAF DYPFLEDIIH
101: SSYSPPPLIL PASQENTNNY SPLMEESKSF ISIGETNKKR SNKKLEGQPS KNLMAERRRR KRLNDRLSLL RSIVPKITKM DRTSILGDAI DYMKELLDKI
201: NKLQEDEQEL GSNSHLSTLI TNESMVRNSL KFEVDQREVN THIDICCPTK PGLVVSTVST LETLGLEIEQ CVISCFSDFS LQASCFEVGE QRYMVTSEAT
301: KQALIRNAGY GGRCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)