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AT5G10340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUEFeggNOG:ENOG41106YDEMBL:AL353995EMBL:CP002688
EnsemblPlants:AT5G10340EnsemblPlants:AT5G10340.1entrez:830898GeneID:830898
Gramene:AT5G10340.1hmmpanther:PTHR31945hmmpanther:PTHR31945:SF5HOGENOM:HOG000112508
InParanoid:Q9LX89InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043
InterPro:IPR017451KEGG:ath:AT5G10340OMA:SHEGETMPaxDb:Q9LX89
Pfam:PF07734Pfam:Q9LX89PhylomeDB:Q9LX89PIR:T50005
PRIDE:Q9LX89PRO:PR:Q9LX89ProteinModelPortal:Q9LX89Proteomes:UP000006548
RefSeq:NP_196596.1SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383
TAIR:AT5G10340TIGRfam:TIGR01640TIGRFAMs:TIGR01640TMHMM:TMhelix
UniProt:Q9LX89
Coordinates (TAIR10) chr5:+:3253122..3255045
Molecular Weight (calculated) 50815.50 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.15
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTSRYFVRK TTIPPPKRPR RIHVSPCHDT PILFGDEVKR CPWGHLAYGG SCLQSITLRD SETSMEELLP HDVIEYHIMV RLDVKTLLKF KSVSKQWMST
101: IQSPSFQERQ LIHHLSQSSG DPHVLLVSLY DPCARQQDPS ISSFEALRTF LVESSAASVQ IPTPWEDKLY FVCNTSCDGL ICLFSFYELP SIVVNPTTRW
201: HRTFPKCNYQ LVAADKGERH ECFKVACPTP GFGKDKISGT YKPVWLYNSA ELDLNDKPTT CEVFDFATNA WRYVFPASPH LILHTQDPVY VDGSLHWFTA
301: LSHEGETMVL SLDLHSETFQ VISKAPFLNV SDEYYIVMCN LGDRLCVSEQ KWPNQVIWSL DDSDHKTWKQ IYSIDLIITS SLFFSAIFAF TPLAVLDKDK
401: LLFYDSTHGD AFLTHDPDTK SYDLPYTSNR CATVVCYFPS LISIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)