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AT5G10240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : asparagine synthetase 3
Curator
Summary (TAIR10)
Encodes asparagine synthetase (ASN3).
Computational
Description (TAIR10)
asparagine synthetase 3 (ASN3); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: asparagine synthetase 2 (TAIR:AT5G65010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-424-MONOMERBioGrid:16166EC:6.3.5.4eggNOG:COG0367
eggNOG:KOG0571EMBL:AF095452EMBL:AL356332EMBL:AL360334
EMBL:BT003929EMBL:BT005014EMBL:CP002688EnsemblPlants:AT5G10240
EnsemblPlants:AT5G10240.1entrez:830888ExpressionAtlas:Q9LFU1Gene3D:3.40.50.620
Gene3D:3.60.20.10GeneID:830888Genevisible:Q9LFU1GO:GO:0004066
GO:GO:0005524GO:GO:0005829GO:GO:0006541GO:GO:0042803
GO:GO:0070981gramene_pathway:6.3.5.4gramene_pathway:ASPARAGINE-BIOSYNTHESISgramene_plant_reactome:1119354
gramene_plant_reactome:1119553gramene_plant_reactome:6875127gramene_plant_reactome:6875656hmmpanther:PTHR11772
hmmpanther:PTHR11772:SF13HOGENOM:HOG000027493InParanoid:Q9LFU1InterPro:IPR001962
InterPro:IPR006426InterPro:IPR014729InterPro:IPR017932InterPro:IPR029055
KEGG:00250+6.3.5.4MEROPS:C44.976OMA:TRHHELHPaxDb:Q9LFU1
Pfam:PF00733Pfam:PF13537Pfam:Q9LFU1Pfscan:PS51278
PhylomeDB:Q9LFU1PIR:T50812PIR:T51888PRIDE:Q9LFU1
PRO:PR:Q9LFU1ProMEX:Q9LFU1PROSITE:PS51278ProteinModelPortal:Q9LFU1
Proteomes:UP000006548Reactome:R-ATH-70614RefSeq:NP_196586.1SMR:Q9LFU1
STRING:3702.AT5G10240.1SUPFAM:SSF52402SUPFAM:SSF56235TAIR:AT5G10240
tair10-symbols:ASN3TIGRfam:TIGR01536TIGRFAMs:TIGR01536UniGene:At.1637
UniPathway:UPA00134UniProt:Q9LFU1
Coordinates (TAIR10) chr5:-:3212934..3216418
Molecular Weight (calculated) 65230.60 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.34
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGILAVLGC VDNSQAKRSR IIELSRRLRH RGPDWSGLHC YEDCYLAHER LAIVDPTSGD QPLYNEDKTI AVTVNGEIYN HKALRENLKS HQFRTGSDCE
101: VIAHLYEEHG EEFVDMLDGM FAFVLLDTRD KSFIAARDAI GITPLYIGWG LDGSVWFASE MKALSDDCEQ FMCFPPGHIY SSKQGGLRRW YNPPWFSEVV
201: PSTPYDPLVV RNTFEKAVIK RLMTDVPFGV LLSGGLDSSL VASVALRHLE KSEAACQWGS KLHTFCIGLK GSPDLKAGRE VADYLGTRHH ELHFTVQDGI
301: DAIEEVIYHV ETYDVTTIRA STPMFLMSRK IKSLGVKMVL SGEGSDEIFG GYLYFHKAPN KKEFHEETCR KIKALHQYDC LRANKSTSAW GVEARVPFLD
401: KEFINVAMSI DPEWKMIRPD LGRIEKWVLR NAFDDEKNPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAN KHVSETMLMN ASFVFPDNTP LTKEAYYYRT
501: IFEKFFPKSA ARATVPGGPS VACSTAKAVE WDAAWSQNLD PSGRAALGVH VSAYGEDKTE DSRPEKLQKL AEKTPAIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)