AT5G06800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb-like HTH transcriptional regulator family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1663 Blast hits to 1650 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1631; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2103374..2105680 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42705.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||
| Length | 375 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMDNINFEFS NASQGSRLQL QQQPPQPFNL QDLNMIQYNQ PSSPWTTETF SGLTPYDCTA NQSFPVQCSS SKPYPSSFHP YHHQSSDSPS LDQSVSMIPM 101: QPLPDQYMKP LYQRSCSNDF AATNASSASY SLSFEASHDP QELCRRTYSN SNVTHLNFTS SQHQPKQSHP RFSSPPSFSI HGGSMAPNCV NKTRIRWTQD 201: LHEKFVECVN RLGGADKATP KAILKRMDSD GLTIFHVKSH LQKYRIAKYM PESQEGKFEK RACAKELSQL DTRTGVQIKE ALQLQLDVQR HLHEQLEIQR 301: NLQLRIEEQG KQLKMMMEQQ QKNKESLLKK LPDAEASLSL LDPHIHSPPS PFLVHDAEAL MLTSYEDTQL QSTKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)