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AT5G01240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : like AUXIN RESISTANT 1
Curator
Summary (TAIR10)
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational
Description (TAIR10)
like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17142eggNOG:COG0814eggNOG:KOG1303EMBL:AJ249442
EMBL:AL137189EMBL:CP002688EnsemblPlants:AT5G01240EnsemblPlants:AT5G01240.1
entrez:831866ExpressionAtlas:Q9LFB2GeneID:831866Genevisible:Q9LFB2
GO:GO:0003333GO:GO:0005886GO:GO:0009734GO:GO:0010328
GO:GO:0015171GO:GO:0015293GO:GO:0016021GO:GO:0048829
GO:GO:0060919hmmpanther:PTHR22950hmmpanther:PTHR22950:SF256HOGENOM:HOG000238482
InParanoid:Q9LFB2InterPro:IPR013057iPTMnet:Q9LFB2KEGG:ath:AT5G01240
KO:K13946MINT:MINT-8066356OMA:YVINAFIPaxDb:Q9LFB2
Pfam:PF01490Pfam:Q9LFB2PhylomeDB:Q9LFB2PIR:T45964
PRIDE:Q9LFB2PRO:PR:Q9LFB2ProteinModelPortal:Q9LFB2Proteomes:UP000006548
RefSeq:NP_195744.1STRING:3702.AT5G01240.1TAIR:AT5G01240tair10-symbols:LAX1
TMHMM:TMhelixUniGene:At.67248UniGene:At.9820UniProt:Q9LFB2
Coordinates (TAIR10) chr5:+:98228..101493
Molecular Weight (calculated) 54603.60 Da
IEP (calculated) 8.83
GRAVY (calculated) 0.41
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGEKQAEES IVVSGEDEVA GRKVEDSAAE EDIDGNGGNG FSMKSFLWHG GSAWDAWFSC ASNQVAQVLL TLPYSFSQLG MLSGILLQIF YGLMGSWTAY
101: LISVLYVEYR ARMEKQEAKS FKNHVIQWFE VLDGLLGPYW KAAGLAFNCT FLLFGSVIQL IACASNIYYI NDRLDKRTWT YIFGACCATT VFIPSFHNYR
201: IWSFLGLGMT TYTAWYLTIA SFLHGQAEGV THSGPTKLVL YFTGATNILY TFGGHAVTVE IMHAMWKPRK FKSIYLMATL YVFTLTLPSA SAVYWAFGDQ
301: LLNHSNAFSL LPKTRFRDTA VILMLIHQFI TFGFACTPLY FVWEKAIGMH HTKSLCLRAL VRLPVVVPIW FLAIIFPFFG PINSAVGALL VTFTVYIIPA
401: LAHMLTYRTA SARRNAAEKP PFFIPSWAGV YVINAFIVVW VLVLGFGFGG WASMTNFIRQ IDTFGLFAKC YQCKPPPAPI AAGAHHRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)