AT4G39730.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Lipase/lipooxygenase, PLAT/LH2 family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:18432950..18433581 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 20136.80 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.77 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
Length | 181 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MARRDVLLPF LLLLATVSAV AFAEDDPDCV YTFYLRTGSI WKAGTDSIIS ARIYDKDGDY IGIKNLQAWA GLMGPDYNYF ERGNLDIFSG RAPCLPSPIC 101: ALNLTSDGSG DHHGWYVNYV EITTAGVHAQ CSTQDFEIEQ WLATDTSPYE LTAVRNNCPV KLRDSVSRVG SEIRKKLSWV V |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)