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AT4G39730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : plasma membrane 17644812
AmiGO : plastid 14729914
AmiGO : plastid 15028209
AmiGO : plastid 15322131
AmiGO : vacuole 15539469
TAIR : plastid 15028209
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
TAIR : plastid 15322131
TAIR : plastid 14729914
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16648217 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lipase/lipooxygenase, PLAT/LH2 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY0ReggNOG:ENOG410ZKR3EMBL:AL022605EMBL:AL161595
EMBL:AY079024EMBL:AY088352EMBL:AY093757EMBL:CP002687
EnsemblPlants:AT4G39730EnsemblPlants:AT4G39730.1entrez:830128Gene3D:2.60.60.20
GeneID:830128GO:GO:0005773GO:GO:0005774GO:GO:0005886
GO:GO:0009507GO:GO:0009535GO:GO:0009579Gramene:AT4G39730.1
hmmpanther:PTHR31718hmmpanther:PTHR31718:SF0HOGENOM:HOG000239495InterPro:IPR001024
KEGG:ath:AT4G39730OMA:SPICALNPfam:PF01477Pfscan:PS50095
PhylomeDB:O65660PIR:T05010PROSITE:PS50095Proteomes:UP000006548
RefSeq:NP_195683.1STRING:3702.AT4G39730.1SUPFAM:SSF49723TAIR:AT4G39730
UniGene:At.2293UniProt:O65660
Coordinates (TAIR10) chr4:+:18432950..18433581
Molecular Weight (calculated) 20136.80 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.10
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MARRDVLLPF LLLLATVSAV AFAEDDPDCV YTFYLRTGSI WKAGTDSIIS ARIYDKDGDY IGIKNLQAWA GLMGPDYNYF ERGNLDIFSG RAPCLPSPIC
101: ALNLTSDGSG DHHGWYVNYV EITTAGVHAQ CSTQDFEIEQ WLATDTSPYE LTAVRNNCPV KLRDSVSRVG SEIRKKLSWV V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)