AT4G32770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VITAMIN E DEFICIENT 1 (VTE1); FUNCTIONS IN: tocopherol cyclase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, plastoglobule, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15804981..15807790 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54723.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIRSLIVSM NPNLSSFELS RPVSPLTRSL VPFRSTKLVP RSISRVSASI STPNSETDKI SVKPVYVPTS PNRELRTPHS GYHFDGTPRK FFEGWYFRVS 101: IPEKRESFCF MYSVENPAFR QSLSPLEVAL YGPRFTGVGA QILGANDKYL CQYEQDSHNF WGDRHELVLG NTFSAVPGAK APNKEVPPEE FNRRVSEGFQ 201: ATPFWHQGHI CDDGRTDYAE TVKSARWEYS TRPVYGWGDV GAKQKSTAGW PAAFPVFEPH WQICMAGGLS TGWIEWGGER FEFRDAPSYS EKNWGGGFPR 301: KWFWVQCNVF EGATGEVALT AGGGLRQLPG LTETYENAAL VCVHYDGKMY EFVPWNGVVR WEMSPWGYWY ITAENENHVV ELEARTNEAG TPLRAPTTEV 401: GLATACRDSC YGELKLQIWE RLYDGSKGKV ILETKSSMAA VEIGGGPWFG TWKGDTSNTP ELLKQALQVP LDLESALGLV PFFKPPGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)