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AT4G31460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L28 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L28 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28 (InterPro:IPR001383); Has 1063 Blast hits to 1063 proteins in 348 species: Archae - 0; Bacteria - 428; Metazoa - 98; Fungi - 129; Plants - 40; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0227eggNOG:KOG3278EMBL:AF412057EMBL:AL080283
EMBL:AL161579EMBL:AY087804EMBL:BT006351EMBL:CP002687
EnsemblPlants:AT4G31460EnsemblPlants:AT4G31460.1entrez:829273GeneID:829273
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT4G31460.1
HAMAP:MF_00373hmmpanther:PTHR13528HOGENOM:HOG000242354InterPro:IPR001383
InterPro:IPR026569KEGG:ath:AT4G31460KO:K02902OMA:GLFWKAK
PANTHER:PTHR13528Pfam:PF00830PhylomeDB:Q9SV23PIR:T10676
PRO:PR:Q9SV23Proteomes:UP000006548RefSeq:NP_194874.1SMR:Q9SV23
STRING:3702.AT4G31460.1SUPFAM:SSF143800TAIR:AT4G31460UniGene:At.3589
UniProt:Q9SV23
Coordinates (TAIR10) chr4:-:15259773..15260847
Molecular Weight (calculated) 24066.80 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.90
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFRGKEMMK KLVKKVGAEN ITPELKEKLK ACVPDTKVVM GRAKRGLYAG RHIQYGNRVS EDGGNKSRRC WKPNVQEKRL FSYIFDSHIK VKVTTHALRC
101: IDKAGGIDEY LLKTPYQKMD TEMGLYWKTK VEARYAELGQ MEVAFFNPED EAKLEQGFKD LNIAKKDARR EARRTFRKKG GGNKGDEEAS IEGGGGSESH
201: QEDDNGWLEA KA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)