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AT4G24130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G46230.1); Has 362 Blast hits to 362 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYDZeggNOG:ENOG410YJJAEMBL:AC002343EMBL:AK118183
EMBL:AL109619EMBL:AL161560EMBL:BT008528EMBL:CP002687
EnsemblPlants:AT4G24130EnsemblPlants:AT4G24130.1entrez:828513Gene3D:2.30.240.10
GeneID:828513GO:GO:0005634Gramene:AT4G24130.1hmmpanther:PTHR31676
hmmpanther:PTHR31676:SF20HOGENOM:HOG000237639InterPro:IPR007493KEGG:ath:AT4G24130
OMA:WVPIVEMPfam:PF04398PhylomeDB:O22978PIR:T13461
Proteomes:UP000006548RefSeq:NP_194144.1STRING:3702.AT4G24130.1SUPFAM:0051283
SUPFAM:SSF141562TAIR:AT4G24130UniGene:At.43869UniProt:O22978
Coordinates (TAIR10) chr4:+:12527861..12528423
Molecular Weight (calculated) 17955.80 Da
IEP (calculated) 5.39
GRAVY (calculated) -0.37
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEGVVVVG GEREGAEIVY GAEECYKQSL ELLEELGFPK GVMPLKNLVE CGRVRATGYV WMKQDTPYEH FFEATNTRVS YGLEVTAYVD KCCMKKMTGV
101: KSKQMFLWVP IVEMSMEEPK SKKIYFKTPM GIGRSFPVTG FMDEEEKRNF YLENPKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)