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AT4G20960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytidine/deoxycytidylate deaminase family protein
Curator
Summary (TAIR10)
encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational
Description (TAIR10)
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G20960-MONOMERBioCyc:MetaCyc:AT4G20960-MONOMEREC:3.5.4.26eggNOG:COG0117
eggNOG:ENOG410IU3WEMBL:AK118717EMBL:AL080282EMBL:AL161554
EMBL:AY088903EMBL:BT006051EMBL:CP002687EnsemblPlants:AT4G20960
EnsemblPlants:AT4G20960.1entrez:827843Gene3D:3.40.430.10GeneID:827843
Genevisible:Q8GWP5GO:GO:0008270GO:GO:0008835GO:GO:0009231
GO:GO:0009507GO:GO:0009570GO:GO:0055114Gramene:AT4G20960.1
gramene_pathway:3.5.4.26gramene_pathway:RIBOSYN2-PWYgramene_plant_reactome:1119379gramene_plant_reactome:6875507
gramene_plant_reactome:6875807hmmpanther:PTHR11079hmmpanther:PTHR11079:SF10HOGENOM:HOG000257443
InParanoid:Q8GWP5InterPro:IPR002125InterPro:IPR004794InterPro:IPR016192
InterPro:IPR016193InterPro:IPR024072KEGG:00740+3.5.4.26+1.1.1.193KEGG:ath:AT4G20960
KO:K11752OMA:AYIHQMLPaxDb:Q8GWP5Pfam:PF00383
Pfam:Q8GWP5Pfscan:PS51747PhylomeDB:Q8GWP5PIR:T10638
PRIDE:Q8GWP5PRO:PR:Q8GWP5PROSITE:PS00903PROSITE:PS51747
ProteinModelPortal:Q8GWP5Proteomes:UP000006548RefSeq:NP_567618.1scanprosite:PS00903
SMR:Q8GWP5STRING:3702.AT4G20960.1SUPFAM:SSF53597SUPFAM:SSF53927
TAIR:AT4G20960TIGRfam:TIGR00326TIGRFAMs:TIGR00326UniGene:At.32681
UniPathway:UPA00275UniProt:Q8GWP5
Coordinates (TAIR10) chr4:+:11212077..11213530
Molecular Weight (calculated) 46676.30 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.05
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MQISCLPISI PSITPRTSIP LLPSLSSNPR RIFNLTSLQS PNHCFFKRLH KSQTGFSNPV LAAMRREEDV EVDDSFYMRK CVELAKRAIG CTSPNPMVGC
101: VIVKDGDIVG QGFHPKAGQP HAEVFALRDA GELAENATAY VSLEPCNHYG RTPPCTEALI KAKVRRVVIG MVDPNPIVFS SGISRLKDAG IDVTVSVEEE
201: LCKKMNEGFI HRMLTGKPFL ALRYSMSVNG CLLDKIGQGA SDSGGYYSKL LQEYDAIILS SSLSDELSSI SSQEAINVSI QPIQIIVASN AQQSHILASS
301: HTVEESGPKV VVFTAKESVA ESGISSSGVE TVVLEKINLD SILDYCYNRG LCSVLLDLRG NVKDLEVLLR DGFEQKLLQK VIIEVLPEWS TKDERQIASM
401: KWLESKHVKD LQSKQLGGSV LLEGYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)