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AT4G16670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.877
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT4G17350.1); Has 215 Blast hits to 188 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 208; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXDCeggNOG:ENOG411042KEMBL:BT020493EMBL:BT026515
EMBL:CP002687EnsemblPlants:AT4G16670EnsemblPlants:AT4G16670.1entrez:827369
GeneID:827369Gramene:AT4G16670.1hmmpanther:PTHR31351hmmpanther:PTHR31351:SF2
HOGENOM:HOG000237680InterPro:IPR008546InterPro:IPR011993InterPro:IPR013666
KEGG:ath:AT4G16670OMA:ASHCLELPfam:PF05703Pfam:PF08458
PhylomeDB:Q5HZ31Proteomes:UP000006548RefSeq:NP_193400.2STRING:3702.AT4G16670.1
SUPFAM:SSF50729TAIR:AT4G16670UniGene:At.33060UniProt:Q5HZ31
Coordinates (TAIR10) chr4:+:9385326..9387570
Molecular Weight (calculated) 46312.80 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.36
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYDRTLNLI PYGLQGVREE EEIEEDDEES MTLSSVPENE TSECSSPPAT YPPIPPRPKT PREPMEFLCR SWSLSTSEIS LALSSQKSDK QLNKNPNISQ
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)