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AT4G16350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23482856 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19832944 (2010): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : calcineurin B-like protein 6
Curator
Summary (TAIR10)
Calcium sensor protein. Binds CIPK14.
Computational
Description (TAIR10)
calcineurin B-like protein 6 (CBL6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, root, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like 3 (TAIR:AT4G26570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12623eggNOG:COG5126eggNOG:KOG0034EMBL:AF192884
EMBL:AF339142EMBL:AK176189EMBL:AL161543EMBL:CP002687
EMBL:Z97341EnsemblPlants:AT4G16350EnsemblPlants:AT4G16350.1entrez:827330
Gene3D:1.10.238.10GeneID:827330Genevisible:Q9C5P6GO:GO:0005509
GO:GO:0005774GO:GO:0019722Gramene:AT4G16350.1hmmpanther:PTHR23056
hmmpanther:PTHR23056:SF51HOGENOM:HOG000233019InParanoid:Q9C5P6IntAct:Q9C5P6
InterPro:IPR002048InterPro:IPR011992KEGG:ath:AT4G16350KO:K06268
MINT:MINT-274903OMA:HVIESIIPaxDb:Q9C5P6Pfam:PF13499
Pfam:Q9C5P6Pfscan:PS50222PhylomeDB:Q9C5P6PIR:B71430
PRIDE:Q9C5P6PRO:PR:Q9C5P6PROSITE:PS50222ProteinModelPortal:Q9C5P6
Proteomes:UP000006548RefSeq:NP_567492.1SMART:SM00054SMR:Q9C5P6
STRING:3702.AT4G16350.1SUPFAM:SSF47473TAIR:AT4G16350tair10-symbols:CBL6
tair10-symbols:SCABP2UniGene:At.4408UniProt:Q9C5P6
Coordinates (TAIR10) chr4:-:9242505..9243669
Molecular Weight (calculated) 26030.40 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.25
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)