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AT4G14500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.774
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G23080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HC0eggNOG:KOG2761EMBL:AF428283EMBL:AY136359
EMBL:BT008748EMBL:CP002687EnsemblPlants:AT4G14500EnsemblPlants:AT4G14500.1
entrez:827097ExpressionAtlas:Q944M2Gene3D:3.30.530.20GeneID:827097
GO:GO:0008289GO:GO:0016021Gramene:AT4G14500.1hmmpanther:PTHR19308
hmmpanther:PTHR19308:SF9HOGENOM:HOG000240611InterPro:IPR002913InterPro:IPR023393
OMA:NPSFTETPfam:PF01852Pfscan:PS50848PhylomeDB:Q944M2
PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_567433.1SMR:Q944M2
STRING:3702.AT4G14500.1SUPFAM:SSF55961TAIR:AT4G14500TMHMM:TMhelix
UniGene:At.26263UniProt:Q944M2
Coordinates (TAIR10) chr4:+:8334391..8337022
Molecular Weight (calculated) 49501.10 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.38
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MDETYFDLLN FFKNPSFTET FVDILLCAVP IWLAVMIGLL IGWSWRPRWT GLIYLGFRSK LRFLWTAPPG FGARRLWLAF TALSAFSVCR TIWSRNDTRA
101: NKSATGSASS QTPVEDNDES GLASRGSDNG TVTEDIVTEN DLEHLLQLLE VGNAALEWQS MMDKTTPNMS YQAWRHEPET GPVIYRSRTV FEDATPDIVR
201: DFFWDDEFRP KWDFMLANFK TLEEDTQTGT MIVQWRKKFP FFCSDREYII GRRIWESGKK YYCVTKGVPY PALPKRDKPR RVELYFSSWV IRAVESRKGD
301: GQQTACEVSL VHYEDMGIPK DVAKLGVRHG MWGAVKKLNS GLRAYQSARK SDSSLSRIAQ MARITTKLNM DSAESSSRDE DRSRAMEYAR QRDHLRMDWK
401: WVVVGGVALA CGLHSGIIGK ALLAGAGQRL ARR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)