AT4G14180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : putative recombination initiation defect 1 | ||||||||
| Curator Summary (TAIR10) |
Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair. | ||||||||
| Computational Description (TAIR10) |
putative recombination initiation defect 1 (PRD1); FUNCTIONS IN: protein binding, protein homodimerization activity; INVOLVED IN: chiasma assembly, meiotic DNA double-strand break formation; LOCATED IN: chloroplast; EXPRESSED IN: floral bud; Has 86 Blast hits to 84 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8178330..8183515 | ||||||||
| Molecular Weight (calculated) | 142305.00 Da | ||||||||
| IEP (calculated) | 5.08 | ||||||||
| GRAVY (calculated) | 0.10 | ||||||||
| Length | 1268 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL 0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE 0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL 0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSAEH SFRKRLVIGF PSVIRVLHYV GEVPCHPFQI QTLKLISSCI 0401: SDFPGIASSS QVQEIALVLK KMLERYYSQE MGLFPDAFAI ICSVFVSLMK TPSFGETADV LTSLQESLRH SILASLSLPE KDSTQILHAV YLLNEVYVYC 0501: TASTSINKTI CIELRHCVID VCTSHLLPWF LSDVNEVNEE ATLGIMETFH SILLQNSDIQ AKEFAELLVS ADWFSFSFGC LGNFCTDNMK QRIYLMLSSL 0601: VDILLEQKTG SHIRDALHCL PSDPQDLLFL LGQASSNNQE LASCQSAALL IFHTSSIYND RSLQNERYQI SYSLEAERII FHLLNEYEWD LGSINIHLES 0701: LKWLFQQESI SKSLIYQIQK ISRNNLIGNE VHNVYGDGRQ RSLTYWFAKL ISEGDNYAAT LLVNLLTQLA EKEEQENDVI SILNLMNTIV SIFPTASNNL 0801: SMNGIGSVIH RLVSGFSNSS LGTSFRTLLL LVFNILTSVQ PAVLMIDESW YAVSIKLLNF LSLRDTAIKQ NHEDMVVIGI LSLVLYHSSD GALVEASRNI 0901: VSNSYLVSAI NTVVDVACSK GPALTQCQDE TNIGEALAFT LLLYFFSLRS LQIVLAGAVD WQTFFGTSTS LETLPVVCIH CHNLCRLMHF GAPQIKLIAS 1001: YCLLELLTGL SEQVDIKKEQ LQCSSSYLKS MKAVLGGLVF CDDIRVATNS ALCLSMILGW EDMEGRTEML KTSSWYRFIA EEMSVSLAMP CSASSTYVNH 1101: HKPAVYLTVA MLRLKNKPVW LRTVFDESCI SSMIQNLNGI NISREIVILF RELMQAELLN SQQVTKLDRA FQECRKQMHR NGTRDETVEE QVQRKIPSIH 1201: DHSEFCNYLV HLMVSNSFGH PSESETYTQK KKQILDEMEQ FSELISTREG RVSPIQEETR QMQTERIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)