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AT4G11350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.815
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF604)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 568 Blast hits to 557 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 181; Plants - 281; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
CAZy:GT31eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:BT050410
EMBL:CP002687EMBL:KJ138762EnsemblPlants:AT4G11350EnsemblPlants:AT4G11350.1
entrez:826737ExpressionAtlas:B6IDH2GeneID:826737GO:GO:0016021
GO:GO:0016740Gramene:AT4G11350.1hmmpanther:PTHR10811hmmpanther:PTHR10811:SF11
HOGENOM:HOG000239947InterPro:IPR006740OMA:WRHRNDMPfam:PF04646
PhylomeDB:B6IDH2Proteomes:UP000006548RefSeq:NP_192874.2TAIR:AT4G11350
TMHMM:TMhelixUniGene:At.33574UniProt:B6IDH2
Coordinates (TAIR10) chr4:+:6901714..6904160
Molecular Weight (calculated) 58211.10 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.37
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGNQKDSSE KPIWDRSSSG ISMTRPGRLI IWLILFISVT YIIYTLKIVS TTHPCEDLTS ESILQQRPEK KAVTVTVKAV PAEQEATDLN HVVFGIAASS
101: KLWKQRKEYI KIWYKPKKMR GYVWLDEEVK IKSETGDQES LPSVRISGDT SSFPYTNKQG HRSAIRISRI VSETLMSLDS ESKKNVRWFV MGDDDTVFVT
201: DNLIRVLRKY DHEQMYYIGS LSESHLQNII FSYGMAYGGG GFAISYPLAV ALSKMQDQCI QRYPALYGSD DRMQACMAEL GVPLTKEIGF HQYDVHGNLF
301: GLLAAHPITP FVSMHHLDVV EPIFPNMTRV RAIKKLTTPM KIDSAALLQQ SICYDKHKSW TISVSWGFAV QVFRGSFSPR EMEMPSRTFL NWYKRADYTA
401: YAFNTRPVSR NHCQKPFVFH MSSAKFDPQL NTTVSEYTRH RVPQPACRWD MANPEEINTI VVYKKPDPHL WNRSPRRNCC RVLQTKRNNT LWINVGVCRA
501: GEVTEVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)