AT4G09940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: egg cell, cultured cell; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1); Has 23148 Blast hits to 16246 proteins in 1296 species: Archae - 286; Bacteria - 2924; Metazoa - 10082; Fungi - 1456; Plants - 812; Viruses - 147; Other Eukaryotes - 7441 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6231786..6233397 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44904.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSESLPEDK PVLEVALTEL PMVAESLPED GSGLEVTCDL RLEHKPARTL LLVGRSGNGK SATGNSILGR KAFKSKGRAS GVTTACELQS STLPNGQIIN 101: VIDTPGLFSL SPSTEFTCRE ILRCFSLTKE GIDAVLLVFS LKNRLTEEEK SALFALKILF GSKIVDYMIV VFTNEDSLED DGDTFEEYLE DSPDFKEILE 201: PCNDRKVLFR NRSNAPVSQK AKQVQELLNY VEEIARLNGK SYMADLSHEI RENETAFQIK QQEILEMKGL YTRQEMLQMK KDMEKSFENQ QLRQMMERVE 301: TELRETKERL EQQLKEEKSA RLELEKRAKE VEKRSSDVVK ELNDEQAKRL ESESRAKEAV KQSNGVVENL NKELARIKQM ATDLQKSKQW CIIM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)