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AT4G09080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Outer membrane OMP85 family protein
Curator
Summary (TAIR10)
Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.
Computational
Description (TAIR10)
TOC75-IV; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 75-III (TAIR:AT3G46740.1); Has 439 Blast hits to 437 proteins in 90 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4775EMBL:AL161514EMBL:AY585655EMBL:CP002687
EnsemblPlants:AT4G09080EnsemblPlants:AT4G09080.1entrez:826486GeneID:826486
Genevisible:Q5IZC8GO:GO:0009662GO:GO:0031359GO:GO:0045036
Gramene:AT4G09080.1hmmpanther:PTHR12815hmmpanther:PTHR12815:SF18HOGENOM:HOG000029694
InParanoid:Q5IZC8IntAct:Q5IZC8InterPro:IPR000184iPTMnet:Q5IZC8
KEGG:ath:AT4G09080OMA:EYTVRHNPaxDb:Q5IZC8Pfam:PF01103
Pfam:Q5IZC8PhylomeDB:Q5IZC8PIR:H85091PRIDE:Q5IZC8
PRO:PR:Q5IZC8ProteinModelPortal:Q5IZC8Proteomes:UP000006548RefSeq:NP_192647.2
STRING:3702.AT4G09080.1TAIR:AT4G09080tair10-symbols:ATTOC75-IVtair10-symbols:TOC75-IV
UniGene:At.50329UniProt:Q5IZC8
Coordinates (TAIR10) chr4:+:5804451..5806093
Molecular Weight (calculated) 43634.20 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.36
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAVKEAVRK IKSLVIPHAD EKDNGIVFEI KLNETDQRVE KWGLDPSLDF FEVTGNCNLG RPNSEGSNQS LMGSVTIRNI FNPKLDDLLS KIEYVRFLEA
101: VKKPRNRTFK TSFFNSRKLS PVFTGGPGYE DLVPPMFVGR DCLKATITEN LTRQRELTYG VMFEEIITRD ENRRISENGL LLSPDGGISI NGPPTTLSGT
201: GIDHIATLQA NITRDNTKLV NGAVVGEKNI FQVDQGLGIG NNFPLFNRHQ LSLTSFIQLK QVEEGSDKPQ PPVLVLHGRY GGCIGDLPSY DVFALGGPNS
301: VRGYSMGELG AAKNILELGA EIRIPVKNTH VYAFAEHGND LGSSKDVKGN PTGLYRKMGH GSSYGLGVKL GMVRAEYTVR HNRGTGALFL RFGERY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)