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AT4G02075.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pitchoun 1 (PIT1); FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G02610.1); Has 1559 Blast hits to 1554 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 105; Plants - 585; Viruses - 28; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AF130849EMBL:CP002687
EMBL:DQ086841EnsemblPlants:AT4G02075EnsemblPlants:AT4G02075.1entrez:828146
Gene3D:3.30.40.10GeneID:828146GO:GO:0005886GO:GO:0008270
GO:GO:0016021Gramene:AT4G02075.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF93
HOGENOM:HOG000238177InterPro:IPR011016InterPro:IPR013083InterPro:IPR022143
InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
KEGG:ath:AT4G02075OMA:FIIIRTIPANTHER:PTHR23012Pfam:PF12428
Pfam:PF12906Pfscan:PS51292PhylomeDB:Q9XF50PROSITE:PS51292
Proteomes:UP000006548RefSeq:NP_567222.1SMART:SM00744SMR:Q9XF50
STRING:3702.AT4G02075.1SUPFAM:SSF57850TAIR:AT4G02075tair10-symbols:PIT1
TMHMM:TMhelixUniGene:At.11152unipathway:UPA00143UniProt:Q9XF50
Coordinates (TAIR10) chr4:-:913555..916414
Molecular Weight (calculated) 25320.20 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.39
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDVILFIDD TKSKVRITRC RICHEEEEES FFEVPCACSG TVKFAHRNCI QRWCNEKGNT TCEICLQVYK DGYTAVLKQS KLIEQEVTIR VNGRRRRRSR
101: RLVSIAESDI SQCNSVADRG ASFCRSLTFT LSVFLLMKHT FDVIYGTEEY PFSVFTVLTL KAIGILLPMF IIIRTISTIQ KTLRRRHQYP ESEEEDRLSS
201: DDDDDLEEED EEQQQHLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)