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AT3G50990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23572548 (2013): endoplasmic reticulum endoplasmic reticulum lumen
  • PMID:23572548 (2013): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G66390.1); Has 4558 Blast hits to 4529 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 246; Plants - 4242; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G50990-MONOMEREC:1.11.1.7eggNOG:ENOG410JU3EeggNOG:ENOG411078U
EMBL:AK229843EMBL:AK229896EMBL:AK229990EMBL:AK230084
EMBL:AL132980EMBL:BT010535EMBL:CP002686EnsemblPlants:AT3G50990
EnsemblPlants:AT3G50990.1entrez:824263GeneID:824263Genevisible:Q9SD46
GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0009505
GO:GO:0020037GO:GO:0042744GO:GO:0044347GO:GO:0046872
GO:GO:0080001GO:GO:0098869Gramene:AT3G50990.1hmmpanther:PTHR31388
hmmpanther:PTHR31388:SF3HOGENOM:HOG000237557InParanoid:Q9SD46InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
KEGG:00940+1.11.1.7KEGG:ath:AT3G50990KO:K00430OMA:LQQGCPI
PaxDb:Q9SD46PeroxiBase:202Pfam:PF00141Pfam:Q9SD46
Pfscan:PS50873PhylomeDB:Q9SD46PIR:T45730PRIDE:Q9SD46
PRINTS:PR00458PRINTS:PR00461PRO:PR:Q9SD46PROSITE:PS00435
PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q9SD46Proteomes:UP000006548
RefSeq:NP_190668.2scanprosite:PS00435scanprosite:PS00436SMR:Q9SD46
STRING:3702.AT3G50990.1SUPFAM:SSF48113TAIR:AT3G50990UniGene:At.35434
UniProt:Q9SD46
Coordinates (TAIR10) chr3:+:18943155..18944605
Molecular Weight (calculated) 38239.20 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.19
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTKTVKSMA GIVLSQISLV ALFPLCICYQ THQSTSSVAS LSPQFYENSC PNAQAIVQSY VANAYFNDPR MAASILRLHF HDCFVNGCDA SVLLDSSGTM
101: ESEKRSNANR DSARGFEVID EIKSALENEC PETVSCADLL ALVARDSIVI CGGPSWEVYL GRRDAREASL IGSMENIPSP ESTLQTILTM FNFQGLDLTD
201: LVALLGSHTI GNSRCIGFRQ RLYNHTGNND PDQTLNQDYA SMLQQGCPIS GNDQNLFNLD YVTPTKFDNY YYKNLVNFRG LLSSDEILFT QSIETMEMVK
301: YYAENEGAFF EQFAKSMVKM GNISPLTGTD GEIRRICRRV NHDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)