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AT3G49780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phytosulfokine 4 precursor
Curator
Summary (TAIR10)
Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.
Computational
Description (TAIR10)
phytosulfokine 4 precursor (PSK4); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation, cell differentiation, response to wounding, organ morphogenesis; LOCATED IN: extracellular matrix; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: phytosulfokine 5 precursor (TAIR:AT5G65870.1); Has 142 Blast hits to 142 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2W4eggNOG:ENOG410ZAZREMBL:AB029820EMBL:AB050627
EMBL:AL132965EMBL:AY088006EMBL:BK000109EMBL:BT001985
EMBL:BT006496EMBL:CP002686EnsemblPlants:AT3G49780EnsemblPlants:AT3G49780.1
entrez:824140GeneID:824140Genevisible:Q9M2Y0GO:GO:0005576
GO:GO:0005794GO:GO:0008283GO:GO:0009887GO:GO:0030154
GO:GO:0031012Gramene:AT3G49780.1hmmpanther:PTHR33285hmmpanther:PTHR33285:SF3
HOGENOM:HOG000239882InParanoid:Q9M2Y0InterPro:IPR009438KEGG:ath:AT3G49780
OMA:MAKFTTIPaxDb:Q9M2Y0Pfam:PF06404Pfam:Q9M2Y0
PhylomeDB:Q9M2Y0PIR:T46044PRIDE:Q9M2Y0PRO:PR:Q9M2Y0
Proteomes:UP000006548RefSeq:NP_566926.1STRING:3702.AT3G49780.1TAIR:AT3G49780
tair10-symbols:ATPSK3 (FORMER SYMBOL)tair10-symbols:ATPSK4tair10-symbols:PSK4TMHMM:TMhelix
UniGene:At.20119UniProt:Q9M2Y0
Coordinates (TAIR10) chr3:+:18465750..18466254
Molecular Weight (calculated) 8897.68 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.19
Length 79 amino acids
Sequence (TAIR10)
(BLAST)
1: MGKFTTIFIM ALLLCSTLTY AARLTPTTTT ALSRENSVKE IEGDKVEEES CNGIGEEECL IRRSLVLHTD YIYTQNHKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)