AT3G48570.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.967 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : secE/sec61-gamma protein transport protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
secE/sec61-gamma protein transport protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein targeting, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT5G50460.1); Has 573 Blast hits to 573 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 240; Fungi - 132; Plants - 109; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:18004604..18004912 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 7683.56 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.61 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.45 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 69 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
1: MEAIDSAIDP LRDFAKSSVR LVQRCHKPDR KEFTKVAVRT AIGFVVMGFV GFFVKLVFIP INNIIVGSS | ||||||||||||||||||||||||||||||||||||||||||||
See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)