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AT3G48570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : secE/sec61-gamma protein transport protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
secE/sec61-gamma protein transport protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein targeting, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT5G50460.1); Has 573 Blast hits to 573 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 240; Fungi - 132; Plants - 109; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111WJ7eggNOG:KOG3498EMBL:BT024517EnsemblPlants:AT3G48570
EnsemblPlants:AT3G48570.1entrez:824017ExpressionAtlas:Q2HIR4Gene3D:1.20.5.820
GeneID:824017GO:GO:0005622GO:GO:0006605GO:GO:0015450
GO:GO:0016021Gramene:AT3G48570.1HAMAP:MF_00422hmmpanther:PTHR12309
InterPro:IPR001901InterPro:IPR008158InterPro:IPR022943InterPro:IPR023391
KEGG:ath:AT3G48570KO:K07342OMA:QRCHKPDPaxDb:Q2HIR4
Pfam:PF00584Pfam:Q9SMP2PhylomeDB:Q2HIR4PRIDE:Q2HIR4
ProteinModelPortal:Q2HIR4RefSeq:NP_566909.1SMR:Q2HIR4STRING:3702.AT3G48570.1
SUPFAM:0043251SUPFAM:SSF103456TAIR:AT3G48570TIGRfam:TIGR00327
TIGRFAMs:TIGR00327TMHMM:TMhelixUniGene:At.48753UniProt:Q2HIR4
UniProt:Q9SMP2
Coordinates (TAIR10) chr3:-:18004604..18004912
Molecular Weight (calculated) 7683.56 Da
IEP (calculated) 10.61
GRAVY (calculated) 0.45
Length 69 amino acids
Sequence (TAIR10)
(BLAST)
1: MEAIDSAIDP LRDFAKSSVR LVQRCHKPDR KEFTKVAVRT AIGFVVMGFV GFFVKLVFIP INNIIVGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)