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AT3G29375.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.435
plasma membrane 0.376
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : XH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G80790.1); Has 4410 Blast hits to 869 proteins in 187 species: Archae - 2; Bacteria - 84; Metazoa - 239; Fungi - 227; Plants - 231; Viruses - 48; Other Eukaryotes - 3579 (source: NCBI BLink).
Protein Annotations
EMBL:AP001309EMBL:CP002686EnsemblPlants:AT3G29375EnsemblPlants:AT3G29375.1
entrez:822597ExpressionAtlas:Q9LIA7GeneID:822597Gramene:AT3G29375.1
hmmpanther:PTHR21596hmmpanther:PTHR21596:SF3HOGENOM:HOG000237495InterPro:IPR005379
ncoils:CoilOMA:EEVNEFNPfam:PF03469PhylomeDB:Q9LIA7
Proteomes:UP000006548RefSeq:NP_566849.2TAIR:AT3G29375UniGene:At.36928
UniProt:Q9LIA7
Coordinates (TAIR10) chr3:+:11280151..11281829
Molecular Weight (calculated) 40002.40 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.65
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPPFPKSWE TKKQKTKVVS WFPCMYLLGL LLGWAEMLSP SINPTSSATP SFEFGTVPSS PSTAPSTSLL FGSSPSIFGA TGSSPSSLPS SASTTTHATS
101: SVTTTQPSLG VASSSGTAIG SPNMPSEITE EIVKEIILVE GNNESQEHKW RSMKQENEEL KKRLRVMKEE LEDKDSELEQ REGLINALLV KERYANDEIL
201: EAQKLLISQM RDLTDDRTTI RVKRMGHLDV EPFVKASKRR LTGNDTEVYA EWEENLRDPH WQPFKRVETG NIVKEVVDEE DEKLKNLREE WGEEVMNAVK
301: TALEEVNEFN PSGRHVVPTL WNSEQGRVAT LREVIAHMTH EIKTLKRKKN LKHRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)