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AT3G25570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.814
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenosylmethionine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1034 Blast hits to 1011 proteins in 270 species: Archae - 0; Bacteria - 57; Metazoa - 222; Fungi - 155; Plants - 530; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G25570-MONOMERBioCyc:ARA:GQT-2553-MONOMEREC:4.1.1.50eggNOG:ENOG410XRN0
eggNOG:KOG0788EMBL:AB025639EMBL:BT012654EMBL:CP002686
EnsemblPlants:AT3G25570EnsemblPlants:AT3G25570.1EnsemblPlants:AT3G25570.2entrez:822144
Gene3D:3.60.90.10GeneID:822144Genevisible:Q9LSU6GO:GO:0004014
GO:GO:0006557GO:GO:0006597GO:GO:0008295Gramene:AT3G25570.1
Gramene:AT3G25570.2gramene_pathway:4.1.1.50gramene_pathway:ARGSPECAT-PWYgramene_pathway:BSUBPOLYAMSYN-PWY
gramene_plant_reactome:1119317gramene_plant_reactome:1119446gramene_plant_reactome:6874834gramene_plant_reactome:6876857
hmmpanther:PTHR11570hmmpanther:PTHR11570:SF4HOGENOM:HOG000159915InParanoid:Q9LSU6
InterPro:IPR001985InterPro:IPR016067InterPro:IPR018166InterPro:IPR018167
KEGG:00270+4.1.1.50KEGG:00330+4.1.1.50KEGG:ath:AT3G25570KO:K01611
OMA:QSENACAPANTHER:PTHR11570PaxDb:Q9LSU6Pfam:PF01536
Pfam:Q9LSU6PhylomeDB:Q9LSU6PIRSF:PIRSF001355PRIDE:Q9LSU6
PRO:PR:Q9LSU6PROSITE:PS01336ProteinModelPortal:Q9LSU6Proteomes:UP000006548
Reactome:R-ATH-351202RefSeq:NP_001189972.1RefSeq:NP_189184.1scanprosite:PS01336
SMR:Q9LSU6STRING:3702.AT3G25570.1SUPFAM:SSF56276TAIR:AT3G25570
TIGRfam:TIGR00535TIGRFAMs:TIGR00535UniGene:At.49653UniPathway:UPA00331
UniProt:Q9LSU6
Coordinates (TAIR10) chr3:-:9287413..9288462
Molecular Weight (calculated) 38292.30 Da
IEP (calculated) 4.46
GRAVY (calculated) 0.04
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)