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AT3G18780.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.653
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin 2
Curator
Summary (TAIR10)
Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.
Computational
Description (TAIR10)
actin 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 8 (TAIR:AT1G49240.1); Has 15142 Blast hits to 14749 proteins in 3039 species: Archae - 6; Bacteria - 12; Metazoa - 5705; Fungi - 5217; Plants - 1599; Viruses - 2; Other Eukaryotes - 2601 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5277eggNOG:KOG0676EMBL:AK230311EMBL:AK317305
EnsemblPlants:AT3G18780EnsemblPlants:AT3G18780.2entrez:821411ExpressionAtlas:Q0WL95
GeneID:821411GO:GO:0005524GO:GO:0048768Gramene:AT3G18780.2
hmmpanther:PTHR11937hmmpanther:PTHR11937:SF247InterPro:IPR004000InterPro:IPR004001
InterPro:IPR020902KEGG:ath:AT3G18780KO:K10355OMA:CDEEISA
PANTHER:PTHR11937Pfam:PF00022Pfam:Q96292PhylomeDB:Q0WL95
PRINTS:PR00190PROSITE:PS00406PROSITE:PS00432PROSITE:PS01132
RefSeq:NP_188508.1scanprosite:PS00406scanprosite:PS00432scanprosite:PS01132
SMART:SM00268SMR:Q0WL95STRING:3702.AT3G18780.2SUPFAM:SSF53067
TAIR:AT3G18780tair10-symbols:ACT2tair10-symbols:DER1tair10-symbols:ENL2
tair10-symbols:LSR2UniGene:At.23604UniGene:At.24689UniGene:At.67767
UniProt:Q0WL95UniProt:Q96292
Coordinates (TAIR10) chr3:+:6475535..6476832
Molecular Weight (calculated) 41879.30 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.18
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDEAGPG IVHRKCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)