AT3G18530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.827 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 181 Blast hits to 181 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6373535..6375050 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41342.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAKALKDLK NLPVSERNID CKKNPCAGKM NGKAEDRPPQ NSVPLDHNHP TGDEIEKPEA ERVIVELEYI KSKDLNNVAE VDAVLKVSIV LSWYYTMLYC 101: DFSFSLDRSS SFHFPQGRNA AFAKVILFVV KSLKNPRSAV SKTACMTSED IFSSYNDHIF DQLDRLLTQL LLKSSQDKRF VCEAAERALV AMTTHVSPAL 201: LLPKLRPCLK NKSPRIRAKA SACFSGCVPR LGIEGMREYG IETNSQNLRR LHGQSSWNLR QCIRKLLLSN PRRRIQRQPL GQSSANQTSH LLVHRLCFVS 301: PMSLVRLERV LLRVHDTSPH YVPCSLYKLS RDQYFYTYWV VILFTPKNKY GMFFVPRQKV Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)