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AT3G13227.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : serine-rich protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G55980.1); Has 173 Blast hits to 173 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8A9eggNOG:ENOG41114I7EMBL:AK117927EMBL:AP002042
EMBL:BT004704EMBL:CP002686EnsemblPlants:AT3G13227EnsemblPlants:AT3G13227.1
entrez:820516GeneID:820516Gramene:AT3G13227.1hmmpanther:PTHR33132
hmmpanther:PTHR33132:SF9HOGENOM:HOG000153019IntAct:Q9LHL1KEGG:ath:AT3G13227
OMA:YHRRNAGPhylomeDB:Q9LHL1Proteomes:UP000006548RefSeq:NP_683560.1
STRING:3702.AT3G13227.1TAIR:AT3G13227UniGene:At.45117UniProt:Q9LHL1
Coordinates (TAIR10) chr3:+:4258028..4258363
Molecular Weight (calculated) 12023.40 Da
IEP (calculated) 10.65
GRAVY (calculated) -0.93
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKEEEAKR RMMMKIKLKE TEADVSQDDI KRQEAYNMSP RVRRGGGGGG GSVGMSKSSS VRQNCLCAPT THPGSFRCRY HRRNAGLGMS RGTSVPSNLS
101: MLAGGDSNSP K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)