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AT3G10985.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.927
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : senescence associated gene 20
Curator
Summary (TAIR10)
A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.
Computational
Description (TAIR10)
senescence associated gene 20 (SAG20); CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1, subgroup (InterPro:IPR016533), Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT5G01740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0YJeggNOG:ENOG41125QDEMBL:AY045972EMBL:AY088170
EMBL:AY091355EMBL:BT000768EMBL:CP002686EnsemblPlants:AT3G10985
EnsemblPlants:AT3G10985.1entrez:2745879GeneID:2745879GO:GO:0007568
GO:GO:0009620Gramene:AT3G10985.1hmmpanther:PTHR33703HOGENOM:HOG000029924
IntAct:Q94AK6InterPro:IPR009798InterPro:IPR016533InterPro:IPR032710
KEGG:ath:AT3G10985OMA:SARNIAWPfam:PF07107PhylomeDB:Q94AK6
PIRSF:PIRSF007948Proteomes:UP000006548RefSeq:NP_974279.1STRING:3702.AT3G10985.1
SUPFAM:SSF54427TAIR:AT3G10985tair10-symbols:ATWI-12tair10-symbols:SAG20
tair10-symbols:WI12UniGene:At.20787UniGene:At.71454UniProt:Q94AK6
Coordinates (TAIR10) chr3:+:3442776..3443108
Molecular Weight (calculated) 11464.60 Da
IEP (calculated) 8.24
GRAVY (calculated) 0.33
Length 110 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)