suba logo
AT2G47010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
no data
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFZ6eggNOG:ENOG410YD8REMBL:AF439832EMBL:AY149938
EMBL:CP002685EnsemblPlants:AT2G47010EnsemblPlants:AT2G47010.1EnsemblPlants:AT2G47010.2
entrez:819315GeneID:819315Gramene:AT2G47010.1Gramene:AT2G47010.2
hmmpanther:PTHR33916hmmpanther:PTHR33916:SF4HOGENOM:HOG000241316KEGG:ath:AT2G47010
OMA:ARRIWTSPhylomeDB:Q944A3Proteomes:UP000006548RefSeq:NP_566093.4
RefSeq:NP_973705.4TAIR:AT2G47010UniGene:At.12578UniProt:Q944A3
Coordinates (TAIR10) chr2:+:19317505..19319252
Molecular Weight (calculated) 55053.10 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.48
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQLAPILAV VNLILLVHGD ERSAVGDPGM KRDGLRVAFE AWNFCNEVGF EAPHMGSPRA ADCFDLSSKC IKAYTEDQSN KTTSGSSLVH KVSDSDNELG
101: IGKPKPGIIS ESALHNPDLY AVEKELYLGS LCQVSDKPNP WSFWMVMLKN GNYDTKSALC PKNGKKIPPF NQPGLFPCFG SGCMNQPTLN HGKTELQRDG
201: QTMKGWFNGT YEQGADFGNG LDGISYYEVV WEKRVGVGGW VFKHKLKTSA KYPWLMLYLR ADATKGFSGG YHYDTRGMLK TLPESPNFKV RLTLNVKQGG
301: GAKSQFYLLD IGSCWKNNGK PCDGDVTTDV TRYSEMIINP ETPLWCNPKS LHNCPPYHTF RNGTRVHRTD HRSFPYEAYH VYCAPGNAEH LELPVGTCDA
401: YSNPQAQEIL QLLPHPVWGE YGYPTRLGDG WVGDPRTWDL DVGGLSSRLF FYQDPGTIPA RRIWTSVDVG TEIYKEDEAI AEWDLSDFDV LIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)