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AT2G40210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 48
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 48 (AGL48); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 41 (TAIR:AT2G26880.1); Has 2805 Blast hits to 2804 proteins in 346 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 69; Plants - 2717; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AF085279EMBL:CP002685
EnsemblPlants:AT2G40210EnsemblPlants:AT2G40210.1entrez:818613GeneID:818613
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT2G40210.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF174HOGENOM:HOG000153847
IntAct:Q9XEF1InterPro:IPR002100KEGG:ath:AT2G40210OMA:KENEECM
Pfam:PF00319Pfscan:PS50066PhylomeDB:Q9XEF1PIR:F84826
PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_181550.1
SMART:SM00432SMR:Q9XEF1STRING:3702.AT2G40210.1SUPFAM:SSF55455
TAIR:AT2G40210tair10-symbols:AGL48UniGene:At.64970UniProt:Q9XEF1
Coordinates (TAIR10) chr2:-:16793213..16794328
Molecular Weight (calculated) 42416.60 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.69
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRKKVKLVW IENDKSRATS LQKMRVGLLK KVKELTILCA VRAIVIIFSP DKVGPLVWPS PQATHGLLDE FFALPKSVQK KKESNVESYL KEKTHKFQEQ
101: LKKSKKKNKE HVIDELMMQL QSGREIADLN QSEMYALLSF SRDTILLCRK KLAFMQFPPL RDPPVFPFEI QVEEFKTTTN DGFVGGGQDN KRAGRTDEAT
201: RFINTDIFKQ SKSYYFFDEW VFPPSPPKYE IPQQMENGNP NPKSYRLYQG SSSNGNPHLE MDPFRLQMMT SQGLAGSVSQ PLQHHSMINN PTMAMNQPSQ
301: DPFDYMRSEL GINEGININN SQFYMSNNTI TANDGVRQEP YPNVTTAGEN NGDATTSNTN MVWPGFNNHH F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)