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AT1G29962.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 64
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 64 (AGL64); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 59 (TAIR:AT1G28460.1); Has 5393 Blast hits to 5393 proteins in 669 species: Archae - 0; Bacteria - 0; Metazoa - 587; Fungi - 264; Plants - 4486; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AY141244EMBL:CP002684
EnsemblPlants:AT1G29962EnsemblPlants:AT1G29962.1entrez:5007741GeneID:5007741
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT1G29962.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF194HOGENOM:HOG000238700
IntAct:Q7XJK9InterPro:IPR002100KEGG:ath:AT1G29962ncoils:Coil
OMA:KRRNGIYPfam:PF00319Pfscan:PS50066PhylomeDB:Q7XJK9
PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_001077625.1
SMART:SM00432SMR:Q7XJK9STRING:3702.AT1G29962.1SUPFAM:SSF55455
TAIR:AT1G29962tair10-symbols:AGL64UniGene:At.40641UniProt:Q7XJK9
Coordinates (TAIR10) chr1:+:10496730..10497287
Molecular Weight (calculated) 21177.40 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.80
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPKKTKGKQ RINIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNGEA SSSSSSSLQR SVMNAHQQAK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)